High Performance Computing (HPC)

Project Overview Hi! I’m Martin Putra, and I’m working on the “Reproducible Performance Benchmarking for Genomics Workflows on HPC Cluster” project under the supervision of In Kee Kim. We are building GenScale, a scalable benchmarking tool for genomics workfload which leverages industrial-grade cluster manager and monitoring systems.

Hi! I’m Martin, and I will be working on Reproducible Performance Benchmarking for Genomics Workflows on HPC Cluster under the mentorship of In Kee Kim. Our work is driven by the scale of computing systems that hosts data commons – we believe that performance characterization of genomics workload should be done rapidly and at the scale similar to production settings.

Project Idea description We aim to characterize the performance of genomic workflows on HPC clusters by conducting two research activities using a broad set of state-of-the-art genomic applications and open-source datasets.